Okay, even though I won't get to some of this stuff in the first installment of the game, I couldn't figure some of it out...

-Are Claw's eyes solid red or just have no pupils? Solid red would be hard, since he seems to do more with his eyes than any other character.
-If the Assassin never landed on that moon to get more fuel, how did it help destroy the Conquerer?
-What is Claw? At one point he's called a rabbit (a "---bit", to be exact, he's called this on a breaking up transmission), but later he's saying something along the lines of "why are rabbit's so perfect"? and unless he's very egotistical, that dosn't make sense. And does he die at the end? It didn't have much written after Kroys died.
-Omega went *poof* near the end, and I don't remember that guy with the S name (not Ninja) every being introduced.
-I think at one point Copper's called short, other times she's referred to as tall... how does her hieght compare to the other chars?
-Why did you have to lace physical descriptions of the characters throughout the story? It's going to take me forever to find where it said what Ducky was wearing again...
-Is it modifing the plot too much to put a huge Heroes Of Might And Magic style battle on that desert planet? One where the slaves and Copper's friends fight against a bunch of turtles, lizards, etc? They fight a real big battle in the story, but the slaves seem to be killing whoever they run into first... And I need to put in an awesome custom batle system to make Xion shutup=P.
-Mind if I give Osama Bin Laden a little cameo on the Conquerer? He could be a commander, and Kroys could ask him "Have you conquered earth yet?". The Humor really seems to flatline at the end, when Kaz suddenly becomes smart.
-Who throws the dagger at Kroys? It sounds like the guy with the A- name (I would look these up but I'm afraid I'll accidently delete all this!) throws it, but then Nightshade refers to it as "her dagger".

That's all the question's I can think of... I'm sure I'll get more later =P.