It's been almost a month here's all the answers:
#1- Name the stolen JJ2 tiles on the planets Pollutus and Chameleon planet
For Pollutus it was tiles from Labrat and for the Chameleon Planet it was Totem poles from the Jungle set.

#2- Name the team colors for CTF
Green, Red, Blue, White

#3- There are 3 ranks of StormTurtle troops. Name their colors and differences.
Theres the normal Green Troop who has all the base functions (duck,run shoot) but nothing special, the Orange Troop who commands other turtles into battle and occasionally has health differences, and the Blue Troops who are typically placed in spots where they can snipe the player.

#4- Only one Weapons Depot "clerk" appears twice. Name him/her.
Prof. Lapin

#5- Aside from the Weapons depot, what is the only other level to feature NPCs that you could not harm?
To be specific, the first level of Carrotopolis

#6- Only one weapon in Jazz's aresenal makes the StormTurtles flee in terror. Name it.
Carrot Grenades


#7- What is the name of the location all Single pak Deathmatch maps take place?
The game calls the area "Wasteland", however I can't remember if any pollutus DM maps use the same name.

#8-One of the buildings in the Carrotopolis background reads "VR-1", what is this a reference to?
The unit of Jaleco that published JJA is listed in the credits as "VR-1"

And just for the hell of it, here's an unrelated question:
"What is the one minor feature of Dark Jazz every fan-artist tends to forget?"
I'll tell you right now- Muscles and Hair aren't the answer.