Here's one of the stupidest and most obvoius ideas i've thought up yet:

We could not even use JJ2 at all!
All we would need to do is copy a few tiles into a Windows Movie Maker or Flash or something and pull the animations using SD and BAM! We got a video. Instead of prodding around Jazz Jackrabbit 2 using loads of triggers and destruct sceneries just pull the animations off of SD.

Note: To do character movements it would be highly recommended to pay attention to the character's transitions. In other words, when Jazz stops moving, he just doesn't suddenly STOP! He slows down to a walk or skids to a stop. So you would want to pay attention to animation transitions. The address for 1.23's character animation is 5A4F14 if i searched that right. I'm too lazy to figure out 1.24's so find that yourself!

Note2: This is a stupid idea I realize. I don't mean use flash for EVERY episode, just use it for certain parts of the episode when Jazz Jackrabbit 2 limits you on abilities.

Note3: I think you people are getting your hopes up way too high. Everybody's like "zOMG ppl are going to watch this is and join the community! We will be huge! WOOT!" But in reality this will probably be a fun little community activity, not a big major Blockbuster hit. Keep that in mind.