Stijn, I'm happy to report that the startup delay is no more, and that I've come up with a solution for the 'save and run issue.'
Performance in a vanilla Wine setup is slightly slower than the optimized package I've set up. I suppose one of the primary advantages of this JCS for Mac release is that it doesn't require any kind of complicated setup, whereas setting up Wine and getting programs to run through it is a bit of a headache for users who may not be technically inclined.
That said, I'm working on changing the way I'm going to distribute this, and I think when all's said and done it will offer some interesting advantages.
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