Are the filenames either all lower-case or ALL UPPER-CASE? On case-sensitive sytems, those are the only options OJ supports. I should probably introduce Firstlettercapitalisedandtherestnot, because that's a common way of converting DOS filenames.
If it isn't that, I can't think of what the problem could be right now. You could try contacting the guy who ported it.
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